MagicTree currently has XSLT tranform stylesheets for the XML output of the following tools:
Acunetix
Arachni as of 0.4.0.2. (Thanks to Herman Stevens of Astyran for contribution)
Burp (as of Burp Suite version 1.3.07)
Imperva Scuba
Metasploit
Nessus XML v.1
Nessus XML v.2
NeXpose Simple XML
NeXpose Full XML
Nikto
Nmap
OpenVAS
OWASP Zed Attack Proxy (Development snapshot as of 6-Feb-2012)
Qualys
w3af
See Adding XSLT Transforms for instructions on how to add support for other programs or scripts that output XML to MagicTree.